STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CD109Uncharacterized protein. (1439 aa)    
Predicted Functional Partners:
CBX8
Chromobox protein like protein 8.
    
 0.577
DPT
Dermatopontin.
      
 0.567
RNF2
E3 ubiquitin-protein ligase RING2.
    
 0.555
UY3_04322
Tetraspanin.
     
 0.499
CBX4
E3 SUMO-protein ligase CBX4.
    
 0.490
BMI1
Polycomb complex protein BMI-1.
    
 0.471
PCGF2
Polycomb group RING finger protein 2.
    
 0.471
SCML2
Sex comb on midleg-like protein 2.
    
 0.464
UY3_12943
Polycomb protein SCMH1.
    
 0.464
UY3_15378
Amyloid-like protein 2.
   
 0.453
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.