STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_16127Protein YIPF7. (247 aa)    
Predicted Functional Partners:
UY3_14659
Protein YIF1B-A.
   
 
 0.806
YIPF3
Protein YIPF3.
   
 
 0.754
DERL1
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
   
 0.726
Derlin-2
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
   
 0.624
SPATA5
Spermatogenesis-associated protein 5.
    
 0.549
UY3_13722
Spermatogenesis-associated protein 5-like protein 1; Belongs to the AAA ATPase family.
    
 0.549
PIGO
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
    
 0.549
RAB1A
Ras-related protein Rab-1A.
   
 
 0.544
UY3_15822
Ras-related protein Rab-1A.
   
 
 0.544
RAB1B
Ras-related protein Rab-1A.
   
 
 0.544
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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