STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMO4LIM domain transcription factor LMO4. (234 aa)    
Predicted Functional Partners:
UY3_14991
LIM domain-binding protein 1.
   
 0.636
LDB2
LIM domain-binding protein 2.
   
 0.636
UY3_02824
LIM domain-binding protein 2.
   
 0.551
UY3_01637
Isopentenyl-diphosphate Delta-isomerase 1.
    
   0.485
SSBP3
Single-stranded DNA-binding protein 3.
    
 
 0.467
UY3_04406
DNA endonuclease RBBP8.
    
 
 0.421
RORB
Nuclear receptor ROR-beta.
      
 0.410
UY3_16923
Transcription factor HES-3.
    
 
 0.407
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.