STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_19209Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6. (335 aa)    
Predicted Functional Partners:
U2AF2
Splicing factor U2AF 65 kDa subunit.
    
 
 0.582
UY3_12755
Bromodomain-containing protein 2.
    
 
 0.524
BRD3
Bromodomain-containing protein 3.
    
 
 0.524
UY3_06192
Bromodomain testis-specific protein.
    
 
 0.524
UY3_00231
Bromodomain-containing protein 2.
    
 
 0.524
UY3_12485
Uncharacterized protein.
    
 
 0.496
UY3_10656
Lysine-specific demethylase 8.
      
 0.495
KDM5A
Lysine-specific demethylase 5A.
      
 0.485
GULP1
PTB domain-containing engulfment adapter protein 1.
      
 0.481
UY3_18853
Lysine-specific demethylase 4B.
      
 0.478
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.