STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB42Ras-related protein Rab-39A. (223 aa)    
Predicted Functional Partners:
UY3_08606
Intersectin-2.
    
 0.849
UY3_10600
Intersectin-1.
    
 0.763
GDI2
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
    
 0.679
COG8
Conserved oligomeric Golgi complex subunit 8.
    
 0.600
RAB30
Ras-related protein Rab-30.
  
  
 
0.597
UY3_12448
Protein prenyltransferase alpha subunit repeat-containing protein 1.
    
 0.587
UY3_12278
Geranylgeranyl transferase type-2 subunit alpha.
    
 0.587
COG3
Conserved oligomeric Golgi complex subunit 3; Belongs to the mitochondrial carrier (TC 2.A.29) family.
     
 0.585
RAB36
Ras-related protein Rab-36.
  
 
0.556
RAB34
Ras-related protein Rab-34.
  
 
0.549
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.