STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Caspase-3Caspase-3; Belongs to the peptidase C14A family. (248 aa)    
Predicted Functional Partners:
XIAP
Baculoviral IAP repeat-containing protein 4.
   
 0.997
UY3_10204
Baculoviral IAP repeat-containing protein 5.
   
 0.952
UY3_16098
Cathepsin G; Belongs to the peptidase S1 family.
    
 0.927
UY3_16501
Granzyme B; Belongs to the peptidase S1 family.
    
 0.927
UY3_16506
Mast cell protease 1A; Belongs to the peptidase S1 family.
    
 0.927
UY3_14379
Granzyme H.
    
 0.927
PARP3
Poly [ADP-ribose] polymerase.
    
 0.919
ACTG1
Actin, cytoplasmic 2.
    
 0.907
ACTB
Actin, cytoplasmic 1.
    
 0.907
UY3_18297
Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
   
 0.866
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.