STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_09113P43 5S RNA-binding protein. (308 aa)    
Predicted Functional Partners:
GTF3C1
General transcription factor 3C polypeptide 1.
    
 0.702
BDP1
Transcription factor TFIIIB component B'' like protein.
    
 0.642
UY3_17824
TATA box-binding protein-like protein 2.
   
 0.543
UY3_18599
General transcription factor 3C polypeptide 3.
    
 0.529
POLR2F
DNA-directed RNA polymerases I, II, and III subunit RPABC2.
   
 
 0.523
POLR3C
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.511
UY3_06963
DNA-directed RNA polymerases I, II, and III subunit RPABC5.
    
 0.507
GTF3C4
General transcription factor 3C polypeptide 4.
    
 0.481
UY3_14165
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.477
UY3_03973
Optineurin.
    
 0.471
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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