UY3_17327 protein (Chelonia mydas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UY3_17327

Guanine nucleotide-binding protein G(O) subunit alpha. (366 aa)

Predicted Functional Partners:

GNAL

0.915

GNB1

0.676

GNB4

0.676

GPSM2

0.667

GNB3

0.657

UY3_10558

0.628

UY3_16883

0.623

UY3_16884

0.623

LPHN3

0.623

UY3_15514

0.623

Your Current Organism:

Chelonia mydas

NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNAL	GNB1	M7BN45	M7ALA8	Guanine nucleotide-binding protein G(Olf) subunit alpha.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	0.823
GNAL	GNB3	M7BN45	M7AMP4	Guanine nucleotide-binding protein G(Olf) subunit alpha.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3.	0.793
GNAL	GNB4	M7BN45	M7BKJ4	Guanine nucleotide-binding protein G(Olf) subunit alpha.	Guanine nucleotide-binding protein subunit beta-4.	0.823
GNAL	UY3_17327	M7BN45	M7BBI5	Guanine nucleotide-binding protein G(Olf) subunit alpha.	Guanine nucleotide-binding protein G(O) subunit alpha.	0.915
GNB1	GNAL	M7ALA8	M7BN45	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	Guanine nucleotide-binding protein G(Olf) subunit alpha.	0.823
GNB1	GNB3	M7ALA8	M7AMP4	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3.	0.903
GNB1	GNB4	M7ALA8	M7BKJ4	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	Guanine nucleotide-binding protein subunit beta-4.	0.901
GNB1	GPSM2	M7ALA8	M7BQ88	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	G-protein-signaling modulator 2.	0.494
GNB1	LPHN3	M7ALA8	M7ATG9	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	Latrophilin-3.	0.888
GNB1	UY3_10558	M7ALA8	M7B3A3	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	Rhodopsin.	0.982
GNB1	UY3_15514	M7ALA8	M7AWF2	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	Latrophilin-2; Belongs to the G-protein coupled receptor 2 family.	0.888
GNB1	UY3_16883	M7ALA8	M7AND1	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	Latrophilin-1; Belongs to the G-protein coupled receptor 2 family.	0.888
GNB1	UY3_16884	M7ALA8	M7AT08	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	Latrophilin-1.	0.888
GNB1	UY3_17327	M7ALA8	M7BBI5	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	Guanine nucleotide-binding protein G(O) subunit alpha.	0.676
GNB3	GNAL	M7AMP4	M7BN45	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3.	Guanine nucleotide-binding protein G(Olf) subunit alpha.	0.793
GNB3	GNB1	M7AMP4	M7ALA8	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3.	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1.	0.903
GNB3	GNB4	M7AMP4	M7BKJ4	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3.	Guanine nucleotide-binding protein subunit beta-4.	0.903
GNB3	GPSM2	M7AMP4	M7BQ88	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3.	G-protein-signaling modulator 2.	0.494
GNB3	LPHN3	M7AMP4	M7ATG9	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3.	Latrophilin-3.	0.888
GNB3	UY3_10558	M7AMP4	M7B3A3	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3.	Rhodopsin.	0.818