RACK1 protein (Chelonia mydas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RACK1

Guanine nucleotide-binding protein subunit beta-2-like 1. (750 aa)

Predicted Functional Partners:

RPS20

0.993

UY3_09368

0.991

UY3_08733

0.991

RPS6

0.990

UY3_03089

0.990

UY3_02152

0.990

RPLP0

0.989

RPS25

0.989

UY3_14164

0.989

EEF2

0.988

Your Current Organism:

Chelonia mydas

NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEF2	RACK1	M7AIR1	M7BCF0	Elongation factor 2.	Guanine nucleotide-binding protein subunit beta-2-like 1.	0.988
EEF2	RPLP0	M7AIR1	M7AHJ0	Elongation factor 2.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.992
EEF2	RPS20	M7AIR1	M7BY56	Elongation factor 2.	40S ribosomal protein S20.	0.969
EEF2	RPS25	M7AIR1	M7B638	Elongation factor 2.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.959
EEF2	RPS6	M7AIR1	M7BPW5	Elongation factor 2.	40S ribosomal protein S6.	0.990
EEF2	UY3_02152	M7AIR1	M7CI27	Elongation factor 2.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.967
EEF2	UY3_03089	M7AIR1	M7BV62	Elongation factor 2.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.950
EEF2	UY3_08733	M7AIR1	M7C121	Elongation factor 2.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.954
EEF2	UY3_09368	M7AIR1	M7BD22	Elongation factor 2.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.983
EEF2	UY3_14164	M7AIR1	M7BKQ4	Elongation factor 2.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.936
RACK1	EEF2	M7BCF0	M7AIR1	Guanine nucleotide-binding protein subunit beta-2-like 1.	Elongation factor 2.	0.988
RACK1	RPLP0	M7BCF0	M7AHJ0	Guanine nucleotide-binding protein subunit beta-2-like 1.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.989
RACK1	RPS20	M7BCF0	M7BY56	Guanine nucleotide-binding protein subunit beta-2-like 1.	40S ribosomal protein S20.	0.993
RACK1	RPS25	M7BCF0	M7B638	Guanine nucleotide-binding protein subunit beta-2-like 1.	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family.	0.989
RACK1	RPS6	M7BCF0	M7BPW5	Guanine nucleotide-binding protein subunit beta-2-like 1.	40S ribosomal protein S6.	0.990
RACK1	UY3_02152	M7BCF0	M7CI27	Guanine nucleotide-binding protein subunit beta-2-like 1.	40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.	0.990
RACK1	UY3_03089	M7BCF0	M7BV62	Guanine nucleotide-binding protein subunit beta-2-like 1.	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.	0.990
RACK1	UY3_08733	M7BCF0	M7C121	Guanine nucleotide-binding protein subunit beta-2-like 1.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.991
RACK1	UY3_09368	M7BCF0	M7BD22	Guanine nucleotide-binding protein subunit beta-2-like 1.	40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.	0.991
RACK1	UY3_14164	M7BCF0	M7BKQ4	Guanine nucleotide-binding protein subunit beta-2-like 1.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.989