STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_16581Histone deacetylase 6. (702 aa)    
Predicted Functional Partners:
RBM34
AT-rich interactive domain-containing protein 4B.
    
 0.816
UY3_15650
AT-rich interactive domain-containing protein 4B.
    
 0.816
PSMA3
Proteasome endopeptidase complex; Belongs to the peptidase T1A family.
    
 0.816
SIN3A
Paired amphipathic helix protein Sin3a.
   
 0.612
UY3_18699
Paired amphipathic helix protein Sin3b.
   
 0.612
LEO1
RNA polymerase-associated protein LEO1.
    
 0.601
UY3_02136
E3 SUMO-protein ligase RanBP2.
   
 0.598
UY3_17264
Cyclin-dependent kinase-like 5.
   
  
 0.582
UY3_17460
WD repeat-containing protein 73.
   
 0.567
RBBP7
Histone-binding protein RBBP7.
   
 0.567
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.