STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_12195Tetratricopeptide repeat protein 35. (436 aa)    
Predicted Functional Partners:
EMC3
Uncharacterized protein.
   
 
 0.966
EMC8
Neighbor of COX4.
   
 0.965
EMC4
Transmembrane protein 85.
   
 
 0.961
MMGT1
Membrane magnesium transporter 1.
    
 
 0.948
UY3_16169
UPF0480 protein C15orf24 like protein.
   
 
 0.944
Derlin-2
Derlin; Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome; Belongs to the derlin family.
    
 
 0.618
SEC63
Translocation protein SEC63 like protein.
    
 
 0.599
SRP54
Signal recognition particle 54 kDa protein.
    
 
 0.510
SRPRA
Signal recognition particle receptor subunit alpha.
      
 0.489
CENPK
Centromere protein K.
      
 0.481
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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