STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_05906E3 ubiquitin-protein ligase RBBP6. (1507 aa)    
Predicted Functional Partners:
UY3_06178
Ubiquitin-conjugating enzyme E2C-binding protein.
    
 0.959
UY3_15723
Cleavage and polyadenylation specificity factor subunit 1.
    
 
 0.957
UY3_02891
Cleavage and polyadenylation specificity factor subunit 2.
    
 
 0.957
DMWD
Symplekin.
    
 
 0.945
TMEM240
Transmembrane protein C1orf70.
    
 
 0.935
WDR82
WD repeat-containing protein 82.
    
 
 0.935
UY3_10882
Cleavage stimulation factor subunit 2.
    
 
 0.916
UY3_00089
WD repeat-containing protein 33.
   
 
 0.915
UY3_00088
WD repeat-containing protein 33.
   
 
 0.915
PCF11
Pre-mRNA cleavage complex 2 protein Pcf11.
   
 
 0.890
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.