STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_11737Nuclear export mediator factor Nemf. (375 aa)    
Predicted Functional Partners:
NEMF
Nuclear export mediator factor NEMF.
 
     0.947
RWDD2B
E3 ubiquitin-protein ligase listerin.
    
 
 0.835
RPL5
60S ribosomal protein L5.
    
   0.630
UY3_11428
60S ribosomal protein L8.
    
   0.620
UY3_00778
Protein spire like protein 2.
    
 
 0.611
UY3_06310
40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.
 
  
   0.584
UY3_06264
Heterogeneous nuclear ribonucleoprotein L-like protein.
 
  
   0.573
UY3_15474
Ankyrin repeat and zinc finger domain-containing protein 1.
   
 
 0.540
RPLP0
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
    
 
 0.518
PELO
Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.
   
 
 0.515
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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