STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_05545RING finger protein 11. (137 aa)    
Predicted Functional Partners:
UBE2N
Ubiquitin-conjugating enzyme E2 N; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.722
UY3_04550
E3 ubiquitin-protein ligase Itchy.
    
 0.702
TAX1BP1
Tax1-binding protein 1 like protein.
   
 
 0.567
TNFAIP3
Tumor necrosis factor alpha-induced protein 3.
   
 
 0.546
UY3_02495
Putative E3 ubiquitin-protein ligase TRIP12.
     
 0.478
OTUB1
Ubiquitin thioesterase OTUB1.
   
 0.466
UY3_01053
NFATC2-interacting protein.
   
 0.445
UBE2K
Ubiquitin-conjugating enzyme E2 K; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.439
SSBP3
Single-stranded DNA-binding protein 3.
   
    0.438
UY3_15902
AN1-type zinc finger and ubiquitin domain-containing protein 1.
   
 0.429
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.