STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SOX6Transcription factor SOX-6. (237 aa)    
Predicted Functional Partners:
SOX13
Transcription factor SOX-13.
 
  
 
 0.944
UY3_04486
Transcription factor SOX-6.
 
     0.925
CTNNB1
Catenin beta-1.
   
 0.723
SOX9
Transcription factor SOX-9.
    
 0.625
ACAN
Aggrecan core protein.
    
 
 0.600
SOX8
Transcription factor Sox-8.
    
 0.573
UY3_02495
Putative E3 ubiquitin-protein ligase TRIP12.
    
 
 0.541
JUP
Junction plakoglobin.
   
 0.534
DMRT1
Doublesex-and mab-3-related transcription factor 1.
    
 
 0.522
CXCL12
Stromal cell-derived factor 1; Belongs to the intercrine alpha (chemokine CxC) family.
      
 0.521
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.