STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_03854Homeobox protein NANOG. (286 aa)    
Predicted Functional Partners:
SALL4
Sal-like protein 4.
   
 0.923
SOX2
Transcription factor SOX-2.
    
 0.772
CTNNB1
Catenin beta-1.
    
 0.649
SALL3
Sal-like protein 3.
   
 0.639
SALL1
Sal-like protein 1.
   
 0.639
SOX14
Transcription factor SOX-14.
    
 0.625
LIN28A
Protein lin-28 like protein A.
   
 
 0.586
NR0B1
Nuclear receptor subfamily 0 group B member 1.
   
 
 0.584
UY3_07102
Nuclear receptor subfamily 0 group B member 2.
   
 
 0.584
UY3_14745
Paired box protein Pax-6.
      
 0.578
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.