STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_12919Lysine-specific histone demethylase 1A. (563 aa)    
Predicted Functional Partners:
RCOR1
REST corepressor 1.
   
 0.983
PHF21A
PHD finger protein 21A.
    
 0.946
HMG20B
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E.
   
 0.941
UY3_12916
Lysine-specific histone demethylase 1A.
 
      0.900
UY3_17092
REST corepressor 2.
   
 0.896
RCOR3
REST corepressor 3.
   
 0.896
GLYR1
Putative oxidoreductase GLYR1.
    
 
 0.870
VPS33A
Vacuolar protein sorting-associated protein 33A; Belongs to the STXBP/unc-18/SEC1 family.
 
      0.868
UY3_07448
Androgen receptor.
    
 0.857
UY3_17343
RE1-silencing transcription factor.
    
 0.845
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.