STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PTRH2Peptidyl-tRNA hydrolase 2. (176 aa)    
Predicted Functional Partners:
USP30
Ubiquitin carboxyl-terminal hydrolase 30; Belongs to the peptidase C19 family.
    
  0.550
UY3_02577
Nucleosome-remodeling factor subunit BPTF.
      
 0.509
EPHX4
Uncharacterized protein.
      
 0.485
PARK7
Protein DJ-1.
   
  
 0.484
UY3_16737
Trafficking protein particle complex subunit 6B.
      
 0.483
SETD5
SET domain-containing protein 5.
      
 0.481
UY3_18297
Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
   
 
 0.477
TOMM20
Mitochondrial import receptor subunit TOM20 like protein.
   
 
 0.471
UY3_06289
Protein LAP2.
      
 0.459
ERBIN
Protein LAP2.
      
 0.459
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.