STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_02746CTD nuclear envelope phosphatase 1. (312 aa)    
Predicted Functional Partners:
CNEP1R1
Uncharacterized protein.
   
 0.950
UY3_10340
Phosphatidate phosphatase LPIN1.
    
 0.890
UY3_04587
Phosphatidate phosphatase LPIN3.
    
 0.890
UY3_00087
DNA-directed RNA polymerase II subunit RPB4.
    
 0.653
UY3_16174
Uncharacterized protein.
   
 0.645
UY3_19093
Uncharacterized protein.
   
 0.645
UY3_13246
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.645
TIMM17B
Mitochondrial import inner membrane translocase subunit TIM17; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.
   
 0.643
UY3_19128
Transcription elongation factor SPT5.
    
 0.596
UY3_18394
DNA-directed RNA polymerases I and III subunit RPAC1.
    
 0.591
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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