STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHD9Chromodomain-helicase-DNA-binding protein 9. (541 aa)    
Predicted Functional Partners:
UY3_01515
Chromodomain-helicase-DNA-binding protein 9.
 
      0.900
UY3_18126
Chromodomain-helicase-DNA-binding protein 8.
 
      0.899
UY3_01516
Chromodomain-helicase-DNA-binding protein 9.
 
      0.899
CHD6
Chromodomain-helicase-DNA-binding protein 6.
 
      0.889
UY3_15650
AT-rich interactive domain-containing protein 4B.
   
 0.608
DAPK3
Death-associated protein kinase 3; Belongs to the protein kinase superfamily.
   
 
 0.606
PSMA3
Proteasome endopeptidase complex; Belongs to the peptidase T1A family.
   
 0.603
RBM34
AT-rich interactive domain-containing protein 4B.
    
 0.599
UY3_15001
FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]
    
 
 0.562
UY3_13565
Fanconi anemia group M protein.
    
 0.561
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.