Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LIG4 | MUS81 | M7CF39 | M7CEH7 | DNA ligase. | Crossover junction endonuclease MUS81. | 0.651 |
LIG4 | POLB | M7CF39 | M7BU99 | DNA ligase. | DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. | 0.739 |
LIG4 | TOP1 | M7CF39 | M7BK01 | DNA ligase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] | 0.400 |
LIG4 | TOP1MT | M7CF39 | M7AN37 | DNA ligase. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] | 0.400 |
LIG4 | UY3_00904 | M7CF39 | M7BXF6 | DNA ligase. | X-ray repair cross-complementing protein 5. | 0.978 |
LIG4 | UY3_03341 | M7CF39 | M7BUC3 | DNA ligase. | Tyrosyl-DNA phosphodiesterase 1. | 0.745 |
LIG4 | UY3_05469 | M7CF39 | M7BJH8 | DNA ligase. | DNA repair endonuclease XPF. | 0.660 |
LIG4 | XRCC1 | M7CF39 | M7CK69 | DNA ligase. | DNA repair protein XRCC1. | 0.943 |
LIG4 | XRCC5 | M7CF39 | M7B3K2 | DNA ligase. | X-ray repair cross-complementing protein 5. | 0.979 |
MUS81 | LIG4 | M7CEH7 | M7CF39 | Crossover junction endonuclease MUS81. | DNA ligase. | 0.651 |
MUS81 | TOP1 | M7CEH7 | M7BK01 | Crossover junction endonuclease MUS81. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] | 0.752 |
MUS81 | TOP1MT | M7CEH7 | M7AN37 | Crossover junction endonuclease MUS81. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA introduced during the DNA replication and transcription by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at the specific target site 5'-[CT]CCTTp site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(3'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 5'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand thus r [...] | 0.652 |
MUS81 | UY3_00904 | M7CEH7 | M7BXF6 | Crossover junction endonuclease MUS81. | X-ray repair cross-complementing protein 5. | 0.647 |
MUS81 | UY3_03341 | M7CEH7 | M7BUC3 | Crossover junction endonuclease MUS81. | Tyrosyl-DNA phosphodiesterase 1. | 0.743 |
MUS81 | UY3_05469 | M7CEH7 | M7BJH8 | Crossover junction endonuclease MUS81. | DNA repair endonuclease XPF. | 0.926 |
MUS81 | XRCC1 | M7CEH7 | M7CK69 | Crossover junction endonuclease MUS81. | DNA repair protein XRCC1. | 0.467 |
MUS81 | XRCC5 | M7CEH7 | M7B3K2 | Crossover junction endonuclease MUS81. | X-ray repair cross-complementing protein 5. | 0.634 |
POLB | LIG4 | M7BU99 | M7CF39 | DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. | DNA ligase. | 0.739 |
POLB | UY3_00904 | M7BU99 | M7BXF6 | DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. | X-ray repair cross-complementing protein 5. | 0.712 |
POLB | UY3_03341 | M7BU99 | M7BUC3 | DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity. | Tyrosyl-DNA phosphodiesterase 1. | 0.739 |
page 1 of 5