STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAMLGPutative ATP-dependent RNA helicase DDX46. (1218 aa)    
Predicted Functional Partners:
PHF5A
PHD finger-like domain-containing protein 5A.
    
 0.990
UY3_11864
Leucine-rich repeat-containing protein C10orf11 like protein.
    
 0.984
SF3B1
Splicing factor 3B subunit 1.
   
 0.980
SF3A1
Splicing factor 3A subunit 1.
   
 0.975
SF3B2
Splicing factor 3B subunit 2.
   
 0.970
AMH
Splicing factor 3A subunit 2.
    
 0.968
UY3_14609
Small nuclear ribonucleoprotein-associated protein N.
    
 0.967
SF3B5
Splicing factor 3B subunit 5.
    
 0.967
SF3B3
Splicing factor 3B subunit 3.
   
 0.965
LSM10
U7 snRNA-associated Sm-like protein LSm10.
   
 0.957
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.