STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_00784PDZ and LIM domain protein 1. (408 aa)    
Predicted Functional Partners:
UY3_05771
Focal adhesion kinase 1.
    
 0.658
UY3_15086
Alpha-actinin-4.
   
 
 0.625
SH3RF3
SH3 domain-containing RING finger protein 3.
    
 0.566
UY3_05995
Alpha-parvin.
   
 0.537
UY3_08859
Beta-parvin.
   
 0.537
UY3_04869
Vinculin.
   
 0.520
ATOX1
Copper transport protein ATOX1.
      
 0.505
UY3_08519
Adenylate cyclase type 1; Belongs to the adenylyl cyclase class-4/guanylyl cyclase family.
      
 0.499
CCKAR
Cholecystokinin receptor type A; Belongs to the G-protein coupled receptor 1 family.
     
 0.487
UY3_17157
Alpha-actinin-3.
   
 
 0.484
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.