ZNF292 protein (Chelonia mydas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ZNF292

Uncharacterized protein. (2690 aa)

Predicted Functional Partners:

ASXL3

0.616

ZNF644

0.606

UY3_11714

0.485

TCF20

0.481

TMEM171

0.473

ASH1L

0.457

CLNS1A

0.457

UY3_18636

0.451

UY3_04979

0.426

Your Current Organism:

Chelonia mydas

NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASH1L	UY3_18636	M7ARN6	M7AXA2	Putative histone-lysine N-methyltransferase ASH1L.	Mediator of RNA polymerase II transcription subunit 13; Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.549
ASH1L	ZNF292	M7ARN6	M7BXL6	Putative histone-lysine N-methyltransferase ASH1L.	Uncharacterized protein.	0.457
ASXL3	ZNF292	M7BXA9	M7BXL6	Putative Polycomb group protein ASXL3.	Uncharacterized protein.	0.616
ASXL3	ZNF644	M7BXA9	M7AWH9	Putative Polycomb group protein ASXL3.	Uncharacterized protein.	0.471
CLNS1A	ZNF292	M7BK70	M7BXL6	Remodeling and spacing factor 1.	Uncharacterized protein.	0.457
TCF20	ZNF292	M7B201	M7BXL6	Transcription factor 20.	Uncharacterized protein.	0.481
TMEM171	ZNF292	M7BW93	M7BXL6	Uncharacterized protein.	Uncharacterized protein.	0.473
TMEM171	ZNF644	M7BW93	M7AWH9	Uncharacterized protein.	Uncharacterized protein.	0.460
UY3_04979	ZNF292	M7C017	M7BXL6	Vascular endothelial zinc finger 1.	Uncharacterized protein.	0.426
UY3_11714	ZNF292	M7BSN7	M7BXL6	Ubiquitin-specific peptidase-like protein 1.	Uncharacterized protein.	0.485
UY3_11714	ZNF644	M7BSN7	M7AWH9	Ubiquitin-specific peptidase-like protein 1.	Uncharacterized protein.	0.471
UY3_18636	ASH1L	M7AXA2	M7ARN6	Mediator of RNA polymerase II transcription subunit 13; Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Putative histone-lysine N-methyltransferase ASH1L.	0.549
UY3_18636	ZNF292	M7AXA2	M7BXL6	Mediator of RNA polymerase II transcription subunit 13; Component of the Mediator complex, a coactivator involved in regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Uncharacterized protein.	0.451
ZNF292	ASH1L	M7BXL6	M7ARN6	Uncharacterized protein.	Putative histone-lysine N-methyltransferase ASH1L.	0.457
ZNF292	ASXL3	M7BXL6	M7BXA9	Uncharacterized protein.	Putative Polycomb group protein ASXL3.	0.616
ZNF292	CLNS1A	M7BXL6	M7BK70	Uncharacterized protein.	Remodeling and spacing factor 1.	0.457
ZNF292	TCF20	M7BXL6	M7B201	Uncharacterized protein.	Transcription factor 20.	0.481
ZNF292	TMEM171	M7BXL6	M7BW93	Uncharacterized protein.	Uncharacterized protein.	0.473
ZNF292	UY3_04979	M7BXL6	M7C017	Uncharacterized protein.	Vascular endothelial zinc finger 1.	0.426
ZNF292	UY3_11714	M7BXL6	M7BSN7	Uncharacterized protein.	Ubiquitin-specific peptidase-like protein 1.	0.485