STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATG16L1Autophagy-related protein 16-1. (591 aa)    
Predicted Functional Partners:
ATG5
Autophagy protein 5; Involved in autophagic vesicle formation.
   
 0.999
WIPI2
WD repeat domain phosphoinositide-interacting protein 2.
   
 0.997
WIPI1
WD repeat domain phosphoinositide-interacting protein 1.
   
 0.986
GABARAPL2
Gamma-aminobutyric acid receptor-associated protein-like 2.
    
 0.975
GABARAPL1
Gamma-aminobutyric acid receptor-associated protein-like 1.
    
 0.972
RB1CC1
RB1-inducible coiled-coil protein 1.
   
 0.972
UY3_09226
Autophagy-related protein 3.
   
 0.969
UY3_09889
Ras-related protein Rab-33B.
    
 
 0.952
ATG14
Beclin 1-associated autophagy-related key regulator.
     
 0.858
ATG7
Ubiquitin-like modifier-activating enzyme ATG7.
     
 0.829
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.