STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HINT1Histidine triad nucleotide-binding protein 1. (241 aa)    
Predicted Functional Partners:
TAF1D
TATA box-binding protein-associated factor RNA polymerase I subunit D.
    
 0.855
UY3_17824
TATA box-binding protein-like protein 2.
    
 0.809
UY3_17188
TATA box-binding protein-associated factor RNA polymerase I subunit A.
    
 0.792
UY3_05481
RNA polymerase I-specific transcription initiation factor RRN3.
    
 0.730
UY3_09030
Nucleolar transcription factor 1.
    
 0.646
UY3_10670
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.639
UY3_15487
DNA-directed RNA polymerase I subunit RPA49.
   
 
 0.634
TTL
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.634
GTF2H5
General transcription factor IIH subunit 5.
   
  0.617
ERCC3
TFIIH basal transcription factor complex helicase XPB subunit.
  
 
  0.599
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.