STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_08114Interferon regulatory factor 3. (444 aa)    
Predicted Functional Partners:
TRAF6
TNF receptor-associated factor 6.
   
 0.962
IKBKE
Inhibitor of nuclear factor kappa-B kinase subunit epsilon.
   
 0.939
TICAM1
TIR domain-containing adapter molecule 1; Involved in innate immunity against invading pathogens. Component of a multi-helicase-TICAM1 complex that acts as a cytoplasmic sensor of viral double-stranded RNA (dsRNA) and plays a role in the activation of a cascade of antiviral responses including the induction of proinflammatory cytokines.
   
 0.933
UY3_08784
Interferon beta.
     
 0.908
UY3_08113
Interferon regulatory factor 3.
 
      0.878
UY3_13456
Myeloid differentiation primary response protein MyD88.
   
 0.751
UY3_17577
Ubl carboxyl-terminal hydrolase 18.
   
 0.682
UY3_13419
CREB-binding protein.
    
 0.669
UY3_02691
TNF receptor-associated factor 6.
   
 0.641
UY3_00890
Uncharacterized protein.
    
 0.626
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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