STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_00110Lariat debranching enzyme. (656 aa)    
Predicted Functional Partners:
UY3_12336
CWF19-like protein 1.
   
 
 0.707
DHX38
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
    
 
 0.690
UY3_09501
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
    
 
 0.690
UY3_18395
Exportin-5.
   
  
 0.620
FKBP1B
Peptidylprolyl isomerase.
      
 0.558
FGFRL1
Fibroblast growth factor receptor-like 1.
      
 0.534
ZMAT5
Zinc finger matrin-type protein 5.
      
 0.513
PRPF18
Pre-mRNA-splicing factor 18.
    
 
 0.511
UY3_13633
Ribonuclease 3.
   
  
 0.507
CWF19L2
CWF19-like protein 2.
   
  
 0.498
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.