STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NHEJ1Non-like proteinous end-joining factor 1. (241 aa)    
Predicted Functional Partners:
XRCC5
X-ray repair cross-complementing protein 5.
    
 0.975
LIG4
DNA ligase.
    
 0.972
PRKDC
DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family.
    
 0.936
UY3_00904
X-ray repair cross-complementing protein 5.
    
 0.936
DCLRE1C
Protein artemis.
   
 
 0.758
UY3_16640
DNA-directed DNA/RNA polymerase mu; Belongs to the DNA polymerase type-X family.
     
 0.682
POLL
DNA polymerase lambda; Belongs to the DNA polymerase type-X family.
     
 0.676
UY3_18893
DNA ligase 1; Belongs to the ATP-dependent DNA ligase family.
    
 0.591
UY3_14025
DNA ligase.
    
 0.585
XRCC4
DNA repair protein XRCC4.
     
 0.555
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.