STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CASS4Cleavage stimulation factor subunit 1. (1392 aa)    
Predicted Functional Partners:
UY3_10882
Cleavage stimulation factor subunit 2.
    
 0.993
UY3_14735
Cleavage stimulation factor subunit 3.
    
 0.992
UY3_02891
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.983
UY3_14654
Zinc finger CCCH domain-containing protein 4.
   
 0.890
UY3_12514
Zinc finger CCCH domain-containing protein 3.
   
 0.890
UY3_06248
Zinc finger CCCH domain-containing protein 6.
   
 0.890
UY3_15723
Cleavage and polyadenylation specificity factor subunit 1.
   
 
 0.857
DMWD
Symplekin.
     
 0.842
PCF11
Pre-mRNA cleavage complex 2 protein Pcf11.
     
 0.840
YTHDC2
Putative ATP-dependent RNA helicase YTHDC2.
   
 
 0.839
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.