STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UY3_05713Hermansky-Pudlak syndrome 4 protein. (825 aa)    
Predicted Functional Partners:
UY3_06355
Hermansky-Pudlak syndrome 1 protein like protein.
    
 0.964
HPS3
Hermansky-Pudlak syndrome 3 protein.
      
 0.641
RAB32
Ras-related protein Rab-32.
     
 0.636
UY3_14992
Hermansky-Pudlak syndrome 6 protein like protein.
      
 0.618
UY3_18509
Hermansky-Pudlak syndrome 5 protein homolog; May regulate the synthesis and function of lysosomes and of highly specialized organelles, such as melanosomes and platelet dense granules.
      
 0.605
SRRD
SRR1-like protein.
      
 0.495
BLOC1S3
Biogenesis of lysosome-related organelles complex 1 subunit 3.
      
 0.493
DTNBP1
Dysbindin.
      
 0.489
UY3_07873
Vacuolar fusion protein CCZ1 like protein.
      
 0.476
GDI2
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
     
 0.461
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.