CLCN6 protein (Chelonia mydas) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CLCN6

Chloride transport protein 6. (593 aa)

Predicted Functional Partners:

OCRL

0.545

MED19

0.540

FAM131B

0.527

PRPF3

0.515

BSND

0.509

UY3_06992

0.500

UY3_19023

0.496

MKRN1

0.476

RNF130

0.471

UY3_13041

0.451

Your Current Organism:

Chelonia mydas

NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BSND	CLCN6	M7BZQ0	M7CA42	Barttin.	Chloride transport protein 6.	0.509
CLCN6	BSND	M7CA42	M7BZQ0	Chloride transport protein 6.	Barttin.	0.509
CLCN6	FAM131B	M7CA42	M7BMU3	Chloride transport protein 6.	Uncharacterized protein.	0.527
CLCN6	MED19	M7CA42	M7AQS6	Chloride transport protein 6.	Mediator of RNA polymerase II transcription subunit 19; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.540
CLCN6	MKRN1	M7CA42	M7B6U3	Chloride transport protein 6.	E3 ubiquitin-protein ligase makorin-1.	0.476
CLCN6	OCRL	M7CA42	M7BVE1	Chloride transport protein 6.	Inositol polyphosphate 5-phosphatase OCRL-1.	0.545
CLCN6	PRPF3	M7CA42	M7ATC8	Chloride transport protein 6.	U4/U6 small nuclear ribonucleoprotein Prp3.	0.515
CLCN6	RNF130	M7CA42	M7B8W9	Chloride transport protein 6.	RING-type domain-containing protein.	0.471
CLCN6	UY3_06992	M7CA42	M7BJ94	Chloride transport protein 6.	Sodium/hydrogen exchanger 8.	0.500
CLCN6	UY3_13041	M7CA42	M7BNW0	Chloride transport protein 6.	Rap guanine nucleotide exchange factor 5.	0.451
CLCN6	UY3_19023	M7CA42	M7AMJ5	Chloride transport protein 6.	Glucose-6-phosphate 1-dehydrogenase; Catalyzes the rate-limiting step of the oxidative pentose- phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis.	0.496
FAM131B	CLCN6	M7BMU3	M7CA42	Uncharacterized protein.	Chloride transport protein 6.	0.527
FAM131B	MKRN1	M7BMU3	M7B6U3	Uncharacterized protein.	E3 ubiquitin-protein ligase makorin-1.	0.429
FAM131B	RNF130	M7BMU3	M7B8W9	Uncharacterized protein.	RING-type domain-containing protein.	0.476
MED19	CLCN6	M7AQS6	M7CA42	Mediator of RNA polymerase II transcription subunit 19; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Chloride transport protein 6.	0.540
MED19	OCRL	M7AQS6	M7BVE1	Mediator of RNA polymerase II transcription subunit 19; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Inositol polyphosphate 5-phosphatase OCRL-1.	0.540
MED19	PRPF3	M7AQS6	M7ATC8	Mediator of RNA polymerase II transcription subunit 19; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	U4/U6 small nuclear ribonucleoprotein Prp3.	0.543
MED19	UY3_19023	M7AQS6	M7AMJ5	Mediator of RNA polymerase II transcription subunit 19; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Glucose-6-phosphate 1-dehydrogenase; Catalyzes the rate-limiting step of the oxidative pentose- phosphate pathway, which represents a route for the dissimilation of carbohydrates besides glycolysis.	0.487
MKRN1	CLCN6	M7B6U3	M7CA42	E3 ubiquitin-protein ligase makorin-1.	Chloride transport protein 6.	0.476
MKRN1	FAM131B	M7B6U3	M7BMU3	E3 ubiquitin-protein ligase makorin-1.	Uncharacterized protein.	0.429