STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX59Putative ATP-dependent RNA helicase DDX59. (625 aa)    
Predicted Functional Partners:
SKIV2L2
Superkiller viralicidic activity 2-like 2.
   
 0.664
SF3B1
Splicing factor 3B subunit 1.
   
 0.661
UY3_13716
Uncharacterized protein.
   
 0.647
WDR12
Ribosome biogenesis protein WDR12; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.631
PES1
Pescadillo like protein.
   
 0.621
UY3_15932
Pescadillo like protein.
   
 0.621
DHX16
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16.
   
 0.621
UY3_03267
Pescadillo like protein.
   
 0.621
UY3_16576
Guanine nucleotide-binding protein-like 3-like protein.
  
 0.612
GNL3
Guanine nucleotide-binding protein-like 3.
  
 0.612
Your Current Organism:
Chelonia mydas
NCBI taxonomy Id: 8469
Other names: C. mydas, Chelonia midas, Chelonia mydas caranigra, Green sea turtle, Testudo mydas, green seaturtle
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