STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA75714.1Sporulation protein YqfC. (91 aa)    
Predicted Functional Partners:
SFA75732.1
Similar to stage IV sporulation protein.
 
  
 0.994
SFA87812.1
Stage III sporulation protein AC.
  
  
 0.844
SFA87827.1
Stage III sporulation protein AB.
  
  
 0.842
SFA87501.1
Stage II sporulation protein M.
  
   
 0.840
SFA75746.1
Hypothetical protein.
 
     0.832
SFA87795.1
Stage III sporulation protein AD.
  
  
 0.817
ybeY
Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.808
SFB27065.1
Sporulation integral membrane protein YlbJ.
 
   
 0.782
SFA87777.1
Stage III sporulation protein AE.
  
  
 0.762
SFA87744.1
Stage III sporulation protein AG.
  
  
 0.761
Your Current Organism:
Clostridium frigidicarnis
NCBI taxonomy Id: 84698
Other names: ATCC BAA-154, C. frigidicarnis, DSM 12271, strain SPL77A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.