STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA79868.1Hypothetical protein. (140 aa)    
Predicted Functional Partners:
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.791
SFA79860.1
Hypothetical protein.
       0.718
SFB23125.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
   0.584
SFA74664.1
Type III secretion system ATPase, FliI/YscN.
  
 
 0.508
SFA76348.1
Hypothetical protein.
 
     0.499
SFA80223.1
FHA domain-containing protein.
  
    0.472
SFA85344.1
FHA domain-containing protein.
  
    0.472
SFB09032.1
FHA domain-containing protein.
  
    0.472
rnfD
Electron transport complex protein RnfD; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the NqrB/RnfD family.
    
  0.450
SFB23227.1
Chemotaxis protein methyltransferase CheR.
    
  0.442
Your Current Organism:
Clostridium frigidicarnis
NCBI taxonomy Id: 84698
Other names: ATCC BAA-154, C. frigidicarnis, DSM 12271, strain SPL77A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.