STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmdGDPmannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (356 aa)    
Predicted Functional Partners:
fcl
GDP-L-fucose synthase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
 0.998
SFB25038.1
Mannose-1-phosphate guanylyltransferase (GDP).
 
 
 0.865
SFA88651.1
Mannose-1-phosphate guanylyltransferase (GDP).
 
 
 0.864
SFA80918.1
Glycosyl transferases group 1.
 
 
 0.857
SFA96959.1
dTDP-4-amino-4,6-dideoxygalactose transaminase; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.850
SFA80802.1
Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase.
  
  
 0.788
SFA80704.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
  
  
 0.747
SFB14974.1
Nucleoside-diphosphate-sugar epimerase.
  
 0.745
SFB35085.1
UDP-glucose 4-epimerase.
  
0.745
SFA80892.1
Glycosyltransferase involved in cell wall bisynthesis.
 
 
 0.733
Your Current Organism:
Clostridium frigidicarnis
NCBI taxonomy Id: 84698
Other names: ATCC BAA-154, C. frigidicarnis, DSM 12271, strain SPL77A
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