STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA83712.1Signal transduction histidine kinase. (366 aa)    
Predicted Functional Partners:
SFA83728.1
DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains.
 
 0.999
SFB00219.1
Two-component system, response regulator YcbB.
  
 0.932
SFB29632.1
Two-component system, chemotaxis family, response regulator CheV.
  
 0.896
SFA69242.1
Signal transduction histidine kinase.
  
 
 0.803
SFB42997.1
Methyl-accepting chemotaxis protein.
    
  0.787
SFB02773.1
Phage shock protein PspC (stress-responsive transcriptional regulator).
  
  
 0.766
SFB36268.1
PAS domain S-box-containing protein.
   
 0.753
SFA83770.1
ABC-2 type transport system permease protein.
 
  
 0.709
SFA83739.1
ABC-2 type transport system ATP-binding protein.
 
  
 0.707
SFB07600.1
Amino acid adenylation domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.692
Your Current Organism:
Clostridium frigidicarnis
NCBI taxonomy Id: 84698
Other names: ATCC BAA-154, C. frigidicarnis, DSM 12271, strain SPL77A
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