STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA95062.1Protoporphyrinogen IX oxidase, menaquinone-dependent (flavodoxin domain). (179 aa)    
Predicted Functional Partners:
SFA95092.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
       0.566
SFB33210.1
Predicted transcriptional regulator YdeE, contains AraC-type DNA-binding domain.
 
     0.548
SFB32988.1
AraC family transcriptional regulator.
 
     0.536
SFB41404.1
Transcriptional regulator, AraC family.
 
     0.536
SFA95111.1
DNA repair photolyase.
 
     0.522
SFA77010.1
Coproporphyrinogen III oxidase, anaerobic.
    
 0.459
SFA75514.1
Coproporphyrinogen III oxidase, anaerobic; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
    
 0.459
SFA95050.1
Flavodoxin, short chain.
       0.435
SFA95028.1
Protein of unknown function.
       0.413
Your Current Organism:
Clostridium frigidicarnis
NCBI taxonomy Id: 84698
Other names: ATCC BAA-154, C. frigidicarnis, DSM 12271, strain SPL77A
Server load: medium (72%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.