STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFA95657.1Ligand-binding sensor domain-containing protein. (345 aa)    
Predicted Functional Partners:
SFA95640.1
Glycerol dehydrogenase.
 
     0.802
SFB25867.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  
 
0.788
SFB34188.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
  
 
0.787
SFB23125.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.776
SFB03517.1
HAMP domain-containing protein.
  
  0.759
SFB10663.1
Two-component system, LytT family, sensor kinase.
 
  
  0.758
SFB00234.1
Two-component system, sensor histidine kinase YcbA.
   
 
 0.725
SFB36268.1
PAS domain S-box-containing protein.
  
 
 0.713
SFB25856.1
Helix-turn-helix domain-containing protein.
 
  
0.671
SFB34173.1
Helix-turn-helix domain-containing protein.
 
  
0.668
Your Current Organism:
Clostridium frigidicarnis
NCBI taxonomy Id: 84698
Other names: ATCC BAA-154, C. frigidicarnis, DSM 12271, strain SPL77A
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