STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cutCFormate C-acetyltransferase; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily. (846 aa)    
Predicted Functional Partners:
SFB23125.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.941
cutD
Pyruvate formate lyase activating enzyme; Catalyzes activation of the choline trimethylamine-lyase CutC under anaerobic conditions by generation of an organic free radical on a glycine residue, via an homolytic cleavage of S-adenosyl-L-methionine (SAM).
 
  
 0.939
SFB24981.1
Pyruvate formate lyase activating enzyme.
 
  
 0.885
SFB12843.1
4-hydroxyphenylacetate decarboxylase subunit A.
 
  
 0.883
SFB25831.1
Glycerol dehydratase, cobalamin-independent, small subunit.
 
  
 0.883
SFB12868.1
4-hydroxyphenylacetate decarboxylase subunit C.
   
 
 0.857
SFA99445.1
Acetaldehyde dehydrogenase (acetylating).
 
 
 0.829
SFA99498.1
Hypothetical protein.
 
     0.822
SFA99513.1
Hypothetical protein.
 
     0.819
SFA83810.1
Glycine radical enzyme activase, YjjW family.
 
  
 0.814
Your Current Organism:
Clostridium frigidicarnis
NCBI taxonomy Id: 84698
Other names: ATCC BAA-154, C. frigidicarnis, DSM 12271, strain SPL77A
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.