STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB07994.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (251 aa)    
Predicted Functional Partners:
SFB07977.1
His Kinase A (phospho-acceptor) domain-containing protein.
  0.966
SFB36268.1
PAS domain S-box-containing protein.
 
 0.940
SFA69242.1
Signal transduction histidine kinase.
 
 0.879
SFB05383.1
Signal transduction histidine kinase.
 
 0.873
SFA81501.1
Signal transduction histidine kinase.
 0.868
SFB35946.1
Signal transduction histidine kinase.
 
 0.865
SFB40428.1
Signal transduction histidine kinase.
 
 0.864
SFB00893.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
  0.860
SFA96286.1
HAMP domain-containing protein.
 0.853
SFB39027.1
Signal transduction histidine kinase.
  
   0.848
Your Current Organism:
Clostridium frigidicarnis
NCBI taxonomy Id: 84698
Other names: ATCC BAA-154, C. frigidicarnis, DSM 12271, strain SPL77A
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