STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB08408.1Cytochrome c biogenesis protein CcdA. (382 aa)    
Predicted Functional Partners:
SFB08426.1
Thioredoxin.
     
 0.633
SFB08389.1
Hypothetical protein.
       0.559
SFB10957.1
Zinc transporter, ZIP family.
   
    0.550
SFB24007.1
Zinc transporter, ZIP family.
   
    0.550
SFB08446.1
Hypothetical protein.
       0.528
msrB
Peptide-methionine (R)-S-oxide reductase.
  
  
 0.513
SFB08510.1
ABC-2 type transport system ATP-binding protein.
       0.506
SFB08473.1
Zn-dependent protease (includes SpoIVFB).
       0.503
SFB08491.1
Hypothetical protein.
       0.503
SFB06309.1
uroporphyrinogen-III synthase.
  
    0.486
Your Current Organism:
Clostridium frigidicarnis
NCBI taxonomy Id: 84698
Other names: ATCC BAA-154, C. frigidicarnis, DSM 12271, strain SPL77A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.