STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB13071.1N-acetylglutamate synthase, GNAT family. (359 aa)    
Predicted Functional Partners:
SFA75220.1
Anti-anti-sigma regulatory factor, SpoIIAA; Belongs to the anti-sigma-factor antagonist family.
 
 
 0.918
SFB12489.1
Stage II sporulation protein E (SpoIIE).
  
 0.908
SFB13058.1
Acyl-protein synthetase, LuxE.
 
     0.899
SFA75258.1
RNA polymerase sporulation-specific sigma factor; Belongs to the sigma-70 factor family.
  
 
 0.898
SFB13037.1
Phenylacetate-coenzyme A ligase PaaK, adenylate-forming domain family.
 
     0.841
flgK
Flagellar hook-associated protein 1 FlgK.
   
    0.786
SFA74553.1
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.786
SFA74628.1
Flagellar motor switch protein FliG.
   
    0.786
SFA70501.1
Hypothetical protein.
  
 
 0.731
SFA75007.1
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; Belongs to the sigma-70 factor family.
  
 
 0.731
Your Current Organism:
Clostridium frigidicarnis
NCBI taxonomy Id: 84698
Other names: ATCC BAA-154, C. frigidicarnis, DSM 12271, strain SPL77A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.