STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB36592.1ABC-type lipoprotein export system, ATPase component. (632 aa)    
Predicted Functional Partners:
SFB00861.1
Putative ABC transport system permease protein.
  
 0.966
SFB36581.1
ABC-type lipoprotein export system, ATPase component.
 
 
0.924
SFB02427.1
Putative ABC transport system permease protein.
 
 0.665
SFB33394.1
Putative ABC transport system permease protein.
 0.655
SFB02438.1
Putative ABC transport system permease protein.
  
  0.640
SFB09948.1
ABC-type lipoprotein export system, ATPase component.
  
 
0.626
aspS-2
Nondiscriminating aspartyl-tRNA synthetase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 2 subfamily.
  
     0.553
SFB33370.1
HlyD family secretion protein.
  
 
 0.544
SFB36602.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
       0.528
SFB03840.1
Putative ABC transport system permease protein.
  
 0.518
Your Current Organism:
Clostridium frigidicarnis
NCBI taxonomy Id: 84698
Other names: ATCC BAA-154, C. frigidicarnis, DSM 12271, strain SPL77A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.