STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB44047.1Hypothetical protein. (186 aa)    
Predicted Functional Partners:
SFB44068.1
NitT/TauT family transport system substrate-binding protein.
 
  
 0.955
SFB44035.1
NitT/TauT family transport system permease protein.
 
   
 0.931
SFB44077.1
Hypothetical protein.
 
     0.916
SFB44086.1
Hypothetical protein.
 
     0.908
SFB44015.1
Alkylmercury lyase.
 
  
 0.879
SFB18589.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
    
 0.841
SFB43997.1
DsrE/DsrF-like family protein.
 
     0.837
SFB44026.1
NitT/TauT family transport system ATP-binding protein.
 
   
 0.813
SFB29632.1
Two-component system, chemotaxis family, response regulator CheV.
   
 0.728
SFB44056.1
Hypothetical protein.
       0.714
Your Current Organism:
Clostridium frigidicarnis
NCBI taxonomy Id: 84698
Other names: ATCC BAA-154, C. frigidicarnis, DSM 12271, strain SPL77A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.