STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARQ44791.1DNA utilization protein GntX. (253 aa)    
Predicted Functional Partners:
ARQ45966.1
ComEC family competence protein.
 
  
 0.893
dprA
Hypothetical protein.
 
 
 0.889
comM
Competence protein ComM.
 
  
 0.828
trmL
tRNA (cytidine(34)-2'-O)-methyltransferase; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.
       0.791
radC
Hypothetical protein; Belongs to the UPF0758 family.
 
    0.734
ARQ44943.1
Hypothetical protein; Belongs to the UPF0102 family.
 
    0.624
rpfG
Cyclic di-GMP phosphodiesterase response regulator RpfG.
  
    0.617
tyrA
Prephenate dehydrogenase.
   
  
 0.610
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.595
bioC_1
Malonyl-[acyl-carrier protein] O-methyltransferase.
  
    0.582
Your Current Organism:
Oxalobacter formigenes
NCBI taxonomy Id: 847
Other names: ATCC 35274, CIP 106513, O. formigenes, strain OxB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.