STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARQ45667.1Putative signaling protein. (706 aa)    
Predicted Functional Partners:
barA_4
Signal transduction histidine-protein kinase BarA.
 
 
 0.993
rpfC_2
Sensory/regulatory protein RpfC.
 
 
0.992
cph2_1
Phytochrome-like protein cph2.
 
 
0.905
ydaM_1
Putative diguanylate cyclase YdaM.
 
 
 0.866
barA_5
Signal transduction histidine-protein kinase BarA.
 
 
 0.849
rpfC_1
Sensory/regulatory protein RpfC.
 
 
 0.848
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
 0.843
ycdT_2
Putative diguanylate cyclase YcdT.
 
0.841
yeaP
Putative diguanylate cyclase YeaP.
 
0.830
ARQ45377.1
Putative signaling protein.
 
 
0.827
Your Current Organism:
Oxalobacter formigenes
NCBI taxonomy Id: 847
Other names: ATCC 35274, CIP 106513, O. formigenes, strain OxB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.