STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARQ45744.1SCP-2 sterol transfer family protein. (155 aa)    
Predicted Functional Partners:
ARQ45743.1
Peptidase family U32.
 
  
 0.971
yhbU
Putative protease YhbU.
 
  
 0.935
lapB
Lipopolysaccharide assembly protein B; Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane; Belongs to the LapB family.
  
     0.490
ARQ45745.1
Hypothetical protein.
       0.480
pyrD_2
Dihydroorotate dehydrogenase.
 
     0.457
rbbA
Ribosome-associated ATPase.
  
    0.413
ARQ45024.1
Sporulation related domain protein.
  
     0.412
yhhJ
Inner membrane transport permease YhhJ.
  
    0.410
mdtN
Multidrug resistance protein MdtN; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.403
Your Current Organism:
Oxalobacter formigenes
NCBI taxonomy Id: 847
Other names: ATCC 35274, CIP 106513, O. formigenes, strain OxB
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