STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exbB_3Biopolymer transport protein ExbB. (249 aa)    
Predicted Functional Partners:
exbD_2
Biopolymer transport protein ExbD.
 
 
 0.976
ARQ45844.1
Transport protein TonB.
 
 
 0.901
exbD_3
Biopolymer transport protein ExbD.
 
 
 0.898
exbD_1
Biopolymer transport protein ExbD.
 
 
 0.862
ARQ45923.1
Gram-negative bacterial tonB protein.
 
 
 0.784
hemR
Hemin receptor.
  
  
 0.757
ARQ44807.1
Biopolymer transport protein ExbD.
  
 
 0.738
ARQ45840.1
Hypothetical protein.
  
    0.701
yddA
Inner membrane ABC transporter ATP-binding protein YddA.
       0.673
tolB
Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
  
 0.654
Your Current Organism:
Oxalobacter formigenes
NCBI taxonomy Id: 847
Other names: ATCC 35274, CIP 106513, O. formigenes, strain OxB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.