STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degUTranscriptional regulatory protein DegU. (221 aa)    
Predicted Functional Partners:
nreB
Oxygen sensor histidine kinase NreB.
 
 
 0.870
barA_4
Signal transduction histidine-protein kinase BarA.
  
 
 0.735
uvrY
Response regulator UvrY.
  
     0.726
rpfC_1
Sensory/regulatory protein RpfC.
  
 
 0.717
barA_5
Signal transduction histidine-protein kinase BarA.
  
 
 0.717
rpfC_2
Sensory/regulatory protein RpfC.
  
 
 0.663
barA_2
Signal transduction histidine-protein kinase BarA.
  
 
 0.623
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
 
 
 0.561
cph2_1
Phytochrome-like protein cph2.
  
 
 0.560
cph2_4
Phytochrome-like protein cph2.
  
 
 0.534
Your Current Organism:
Oxalobacter formigenes
NCBI taxonomy Id: 847
Other names: ATCC 35274, CIP 106513, O. formigenes, strain OxB
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.